[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,768 items for (author: zhang & c)

EMDB-43753:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

PDB-8w2o:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

EMDB-41479:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpo:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-36366:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

PDB-8jjr:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

EMDB-36776:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36777:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36778:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36786:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0p:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0q:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0r:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k15:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-44736:
HIV Envelope trimer BG505 SOSIP.664 in complex with wild type CH103 antibody
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44738:
HIV Envelope BG505 SOSIP.664 in complex with one Fab of CH103 E75K/D76N mutant
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44739:
HIV Envelope trimer CH505 SOSIP.664 in complex with wild type CH103 antibody
Method: single particle / : Edwards RJ, Mansouri K

EMDB-39916:
SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39917:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39918:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39919:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39921:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39922:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39923:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-41088:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t79:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41453:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

EMDB-41454:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

EMDB-41455:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

EMDB-41457:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state) (consensus map)
Method: single particle / : Feng Z, Accardi A

EMDB-41458:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)(local refined monomer map)
Method: single particle / : Feng Z, Accardi A

EMDB-41477:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the absence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-41478:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (intermediate state)
Method: single particle / : Feng Z, Accardi A

EMDB-41480:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-41481:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41482:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (short TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41483:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (bent TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41484:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6/short TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8toi:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

PDB-8tok:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

PDB-8tol:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

PDB-8tpm:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the absence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpn:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (intermediate state)
Method: single particle / : Feng Z, Accardi A

PDB-8tpp:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpq:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tpr:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (short TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tps:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (bent TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tpt:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6/short TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-36147:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

EMDB-36149:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more